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CueMol: Molecular Visualization Framework
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CueMol2
↑
Tutorial
CueMol2 GUI tutorial
(in Japanese)
Translation by Google
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Manual
Documents (translation of Japanese version by Google)
↑
General topics
Basic of Styles
Style
Camera
How to specify colors (color notations)
↑
Opening/Saving files, etc.
Open files
Open scene files
Open PyMOL session file
Fetch PDB/density map from servers
Save files
Save scene files
Options for saveing Scene
Color management (rendering in CMYK mode, etc)
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GUI elements
Main window
Tabbed molecular view (MolView)
Multiple main window
Scene panel
Renderer group
Copy-and-paste of Objects and Renderers
MolStruct panel
Selection panel
Color panel
Symmetry panel
Density map panel
View panel
Animation panel
Log display panel
Sequence display panel
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Representations (renderers)
Common renderer settings
Renderers for molecules
Space-filling representation (cpk renderer)
Ball&stick representation (ballstick renderer)
Cartoon representation (cartoon renderer)
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Molecule modeling
Merge molecule
Delete atoms
Change chain ID
Change residue number
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Tools
Molecular surface (solvent excluded surface)
Creating the molecular surface
Display of molecular surface
Cross section generation of molecular surface
Electrostatic potential calculation
Installation of APBS and PDB2PQR
Electrostatic potential map calculation using APBS
Molecular superposition
Automatic extraction of interactions
Create a new covalent bond
Protein secondary structure assignment
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Rendering to image files
POV-Ray rendering
POV-Ray rendering dialog
Rendering of semi-transparent objects
About Material
Toon rendering
Rendering of scenes with a sense of depth using Radiosity method
About Lighting and Radiosity method
Other rendering topics
Exporting to PNG images
Exporting to POV files (without rendering)
Exporting to LuxRender scene files for GI rendering
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Scripting interface
Executing scripts
Python API
High-level API
Low-level API
↑
CueMol 1.1
↑
Tutorial
CueMol1.1 GUI tutorial
(in Japanese)
Translation by Google
QScript tutorial
(in Japanese)
Translation by Excite
↑
Manual
Reference
Translation by Google
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recent(5)
2019-01-14
Updates
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2018-05-08
cuemol2/MultiGrad
2018-02-15
cuemol2/MolEdit
Last-modified: Thu, 15 Feb 2018 09:07:46 JST (1066d)
Link:
cuemol2/MultiGrad
(984d)
cuemol2/MolEdit
(1066d)
cuemol2/FetchPDB
(1066d)
cuemol2/SequenceDisplayPanel
(1250d)
PyHighLevelAPI1.0/index
(1285d)
PyLowLevelAPI1.0/index
(1285d)
cuemol2/Prot2ndryStr
(1347d)
cuemol2/Style_Basic
(1391d)
cuemol2/Style
(1391d)
cuemol2/ColorManagementSystem
(1668d)
cuemol2/MultipleWindow
(1683d)
cuemol2/MolSuperpose
(1689d)
cuemol2/NonStdBond
(1689d)
cuemol2/IntrTool
(1689d)
cuemol2/APBS_ElePot
(1689d)
cuemol2/APBS_Install
(1689d)
cuemol2/MolSurfCut
(1689d)
cuemol2/MolSurfaceDisp
(1689d)
cuemol2/MsmsMolSurface
(1689d)
cuemol2/LuxRenderExport
(1690d)
cuemol2/CopyPaste
(1770d)
cuemol2/NameLabelRenderer
(1770d)
cuemol2/RendStyles
(1770d)
cuemol2/CompositeRenderer
(1770d)
cuemol2/OpenFiles
(1931d)
cuemol2/PovExport
(1931d)
cuemol2/ImageExport
(1931d)
cuemol2/POVRayRenderLighting
(1931d)
cuemol2/Radiosity
(1931d)
cuemol2/Material
(1931d)
cuemol2/PostAlphaBlend
(1931d)
cuemol2/POVRayRenderDialog
(1931d)
cuemol2/SceneSaveAsOption
(1931d)
cuemol2/PSEImporter
(1931d)
cuemol2/ColorSyntax
(1931d)
cuemol2/Camera
(1931d)
cuemol2/CartoonRenderer
(1942d)
cuemol2/RibbonRenderer
(1942d)
cuemol2/EdgeLines
(1942d)
cuemol2/CommonRendererProps
(1942d)
cuemol2/BallStickRenderer
(1945d)
cuemol2/CPKRenderer
(1945d)
cuemol2/UseGLShader
(1945d)
cuemol2/LogDisplayPanel
(1945d)
cuemol2/RendGroup
(2259d)
cuemol2/ObjRendCopyPaste
(2259d)