CueMol

CueMol is a program for the macromolecular structure visualization on the Windows platform (CueMol was formerly called "Que"). CueMol aims to visualize and build the crystallographic models of macromolecules, with the user-friendly interfaces. Currently supported files are molecular coordinates (PDB format), electron density (CCP4, CNS , and BRIX format), MSMS surface data, and GRASP electrostatic potential map.

snapshot1_s.png snapshot2_s.png

Please send any comments, questions, or requests about CueMol to mm1.pngmm2.png

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What's new?

2010/1/14
Released version 1.1.0.196.
2008/12/25
Released version 1.1.0.189.
Now you can read electron density map directly from MTZ file.
2008/1/14
Released version 1.1.0.179.
2007/12/11
Released version 1.1.0.176.
2006/9/2
Released version 1.1.0.162.
2006/8/8
Released version 1.1.0.161.
2006/7/24
Released version 1.1.0.159.
2006/5/11
Released version 1.1.0.150.
2006/5/7
Released version 1.1.0.149.
2006/4/7
Released version 1.1.0.138.
2006/4/5
Released version 1.1.0.136.
2006/2/25
Released version 1.1.0.131.
2005/12/06
Released version 1.1.0.127.
2005/10/15
Now you can access this page from:
http://www.cuemol.org/en/
2005/10/02
Released version 1.1.0.115.
2005/09/26
Released version 1.1.0.114.
Secondary structure calculation from structure is implemented.
2005/07/31
Released version 1.1.0.111. This release contains bug fixes about Tube and Ribbon renderers, and several minor changes.
2005/06/02
Released new version 1.1.0.108. From this release, CueMol ActiveX control is included.
2005/03/27
Released bugfix version (1.0.0 build 63).
2005/03/13
Released alpha version 1.1.0 build 92.
2005/01/03
Released version 1.0.0 build 61. This is the first official release of the 1.0.0 branch.
2004/10/24
Released version 1.0.0 build 60.
2004/10/9
English version pages are created.
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Main functions

  • Display proteins and nucleic acids
    Supported input format is PDB (molecular coordinates).
    • simple stick model
    • main-chain trace (Calpha backbone, phosphate backbone, ...)
    • ball-and-stick model
    • CPK model
  • Functions as a molecular viewer
    • Residue selection by clicking
    • Residue selection by chain and residue numbers
    • Change or create new display for the selected residues
    • Display symmetric molecules
    • Display unit cell
    • Hardware stereo support
    • Display the distance between atoms
    • Dump/restore the current state to/from the file (workspace)
  • Display electron-density maps
    Supported input formats are CCP4 (type2), X-PLOR/CNS (ascii), and BRIX
    • Mesh and surface display of electron-density maps (you can change the contour level dynamically!!)
    • Display electron density of an arbitrary (cubic) region.
  • Geometric object (solid/dashed lines)
  • Molecular surface object (generated by MSMS program)
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Menu
Last-modified: Thu, 14 Jan 2010 21:43:30 JST (232d)